Publikationsliste Nils Rugen
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2026
Ditz, N., Brandt, D., Gasper, M., Röhricht, H., Hegermann, J., Wallbott, A., Eirich, J., Blum, N., Rugen, N., Niehaus, M., Martinez, M. D. P., Heinemann, B., Kühn, K., Maurino, V. G., Müller-Schüssele, S., Hildebrandt, T. M., Schwarzländer, M., Braun, H. P., Herde, M., ... Finkemeier, I. (2026). Seed mitochondria are equipped with cristae and a full proteome to kickstart germination. Current biology, 36(17), 4320-4339.e7. https://doi.org/10.1016/j.cub.2026.07.044
Döring, M., de Jonge, J., Braun, HP., & Rugen, N. (2026). Identification of the plant mitochondrial OrfX protein: A mass spectrometry approach. FEBS letters, 600(15), 2117-2128. https://doi.org/10.1002/1873-3468.70417
Dourmap, C., Baud, S., Eubel, H., Rugen, N., Crilat, É., Beradocco, S., Marnet, N., Clément, G., Tcherkez, G., Planchais, S., Cabassa, C., Lebreton, S., Bordenave-Jacquemin, M., Maldiney, R., Carol, P., Braun, H.-P., Masclaux-Daubresse, C., Bouchereau, A., Savouré, A., & Guivarc’h, A. (2026). Pyrroline-5-carboxylate dehydrogenase is a key player in nitrogen metabolism in maturing seeds of Arabidopsis thaliana. Journal of Experimental Botany, 77(6), 1827-1843. https://doi.org/10.1093/jxb/eraf542
Grünwald, M., Adrar, N., Francis, G., Rugen, N., Döring, M., Braun, H.-P., & Esatbeyoglu, T. (2026). A Comparative Study of the Nutritional and Physiological Potential of Xuta (Edible Jatropha curcas L.) Protein: Insights into Its Digestibility and Effects on the Intestinal Barrier. Current Research in Food Science, 12, Artikel 101257. https://doi.org/10.1016/j.crfs.2025.101257
2025
Döring, M., Braun, H.-P., & Rugen, N. (2025). Disturbed RNA editing in MORF3-deficient Arabidopsis mitochondria leads to impaired assembly of complex I. Plant physiology, 199(2), Artikel kiaf471. https://doi.org/10.1093/plphys/kiaf471
Knoch, D., Rugen, N., Thiel, J., Heuermann, M. C., Kuhlmann, M., Rizzo, P., Meyer, R. C., Wagner, S., Schippers, J. H. M., Braun, H.-P., & Altmann, T. (2025). A spatio-temporal transcriptomic and proteomic dataset of developing Brassica napus seeds. Scientific data, 12(1), Artikel 759. https://doi.org/10.1038/s41597-025-05115-4
2024
Rinne, J., Niehaus, M., Medina-Escobar, N., Straube, H., Schaarschmidt, F., Rugen, N., Braun, H.-P., Herde, M., & Witte, C.-P. (2024). Three Arabidopsis UMP kinases have different roles in pyrimidine nucleotide biosynthesis and (deoxy)CMP salvage. The plant cell, 36(9), 3611-3630. https://doi.org/10.1093/plcell/koae170
Rugen, N., Senkler, M., & Braun, H.-P. (2024). Deep Proteomics reveals incorporation of unedited proteins into mitochondrial protein complexes in Arabidopsis. Plant physiology, 195(2), 1180-1199. https://doi.org/10.1093/plphys/kiad655
2023
Brajkovic, S., Rugen, N., Agius, C., Berner, N., Eckert, S., Sakhteman, A., Schwechheimer, C., & Kuster, B. (2023). Getting Ready for Large-Scale Proteomics in Crop Plants. Nutrients, 15(3), Artikel 783. https://doi.org/10.3390/nu15030783
Klusch, N., Dreimann, M., Senkler, J., Rugen, N., Kühlbrandt, W., & Braun, H.-P. (2023). Cryo-EM structure of the respiratory I + III
2 supercomplex from Arabidopsis thaliana at 2 Å resolution. Nature plants, 9(1), 142-156. https://doi.org/10.1038/s41477-022-01308-6
Schröder, L., Rupp, O., Senkler, M., Rugen, N., Hohnjec, N., Goesmann, A., Küster, H., & Braun, H.-P. (2023). The Viscum album Gene Space database. Frontiers in Plant Science, 14, Artikel 1193122. https://doi.org/10.3389/fpls.2023.1193122
2021
Rugen, N., Schaarschmidt, F., Eirich, J., Finkemeier, I., Braun, H.-P., & Eubel, H. (2021). Protein interaction patterns in Arabidopsis thaliana leaf mitochondria change in dependence to light. Biochimica et Biophysica Acta - Bioenergetics, 1862(8), Artikel 148443. https://doi.org/10.1016/j.bbabio.2021.148443
2020
Fuchs, P., Rugen, N., Carrie, C., Elsässer, M., Finkemeier, I., Giese, J., Hildebrandt, T. M., Kühn, K., Maurino, V. G., Ruberti, C., Schallenberg-Rüdinger, M., Steinbeck, J., Braun, H. P., Eubel, H., Meyer, E. H., Müller-Schüssele, S. J., & Schwarzländer, M. (2020). Single organelle function and organization as estimated from Arabidopsis mitochondrial proteomics. Plant Journal, 101(2), 420-441. https://doi.org/10.1111/tpj.14534, https://doi.org/10.15488/11679
Niehaus, M., Straube, H., Künzler, P., Rugen, N., Hegermann, J., Giavalisco, P., Eubel, H., Witte, C. P., & Herde, M. (2020). Rapid Affinity Purification of Tagged Plant Mitochondria (Mito-AP) for Metabolome and Proteome Analyses. Plant physiology, 182(3), 1194-1210. https://doi.org/10.1104/PP.19.00736, https://doi.org/10.15488/17903
2019
Batista-Silva, W., Heinemann, B., Rugen, N., Nunes-Nesi, A., Araújo, W. L., Braun, H. P., & Hildebrandt, T. M. (2019). The role of amino acid metabolism during abiotic stress release. Plant Cell and Environment, 42(5), 1630-1644. https://doi.org/10.1111/pce.13518
Rugen, N., Straube, H., Franken, L. E., Braun, H. P., & Eubel, H. (2019). Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants. Molecular and Cellular Proteomics, 18(7), 1345-1362. https://doi.org/10.1074/mcp.RA119.001396, https://doi.org/10.15488/11680, https://doi.org/10.15488/12222, https://doi.org/10.1074/mcp.AAC119.001674
Rugen, N. (2019). From single proteins to supercomplexes: a proteomic view on plant mitochondria. [Dissertation, Gottfried Wilhelm Leibniz Universität Hannover]. Leibniz Universität Hannover. https://doi.org/10.15488/7463
2018
Senkler, J., Rugen, N., Eubel, H., Hegermann, J., & Braun, H. P. (2018). Absence of Complex I Implicates Rearrangement of the Respiratory Chain in European Mistletoe. Current biology, 28(10), 1606-1613.e4. https://doi.org/10.1016/j.cub.2018.03.050
2016
Krueger, J., Pohl, S., Preusse, M., Kordes, A., Rugen, N., Schniederjans, M., Pich, A., & Häussler, S. (2016). Unravelling post-transcriptional PrmC-dependent regulatory mechanisms in Pseudomonas aeruginosa. Environmental microbiology, 18(10), 3583-3592. https://doi.org/10.1111/1462-2920.13435
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